You need to implement mdm distributed settings to your apps. So office365 admins can pre configure apps with username details (possibly passwords) and share drive settings. And who knows what else.
A number of mdm solutions allow for pre configuration of apps when they are distributed by their mdm, through simple xml code, providing the app supports it.
In many schools and company's that have mdm solutions this allows them to leverage their mdm to improve the user experience of the apps.
Further reading for your developers.
Example app that supports mdm configuration
This is really good feedback. We are working on adding MDM functionality. Please email us at firstname.lastname@example.org to tell us more about what you’d like to see.
Unlock the user account when the user locked himself after entering the wrong password103 votes
We are interested in understanding this feature request better. Is this functionality available somewhere else within Office 365?
I suggest you give us the option to enable Microsoft Account features and services on our O365 accounts. It's painful having to manage both!40 votes
This is great feedback. Please tell us more about what you’d like to see for Microsoft Account features.
Don't seem to apply until you have browsed all users on the app17 votes
We are not sure we understand the ask. Please email us at email@example.com to help us understand.
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